Ferns at the Central Siberian Botanical Garden herbarium collections (NS, NSK)

Latest version published by Central Siberian Botanical Garden SB RAS on Aug 11, 2021 Central Siberian Botanical Garden SB RAS

Herbarium specimens of ferns kept at the Central Siberian Botanical Garden SB RAS (NS, NSK) were digitised in 2021. Specimens of 20 families of Polypodiopsida were included in this dataset except Equisetaceae. Family Ophioglossaceae was digitised and published separately (Kovtonyuk et al., 2021). Specimens published in datasets "Vascular plants from European Russia in the CSBG SB RAS Digital herbarium" (Kovtonyuk, Han, Gatilova, 2020, 2021) and "Foreign Asia herbarium collection in CSBG (NS)" (Gatilova et al., 2020) were also excluded.

In the dataset specimens from 43 countries of Europe, Asia, America, Africa and Australia (Oceania) are presented, most of them are from Russia (6918). 5092 specimens from Russia are published in the first time.

Collectors with most gathered specimens are: Krasnoborov I. M. (913), Ivanova M. M. (565), Shaulo D. N. (538), Malyshev L. I. (296), Kiseleva A. A. (281), Lashchinsky N. N. (270), Hanminchun V. M. (251), Vodopyanova N. S. (230), Bardunov L. V. (196), Peshkova G. A. (147), Lomonosova M. N. (133), Petrochenko Yu. N. (126), Andrulaitis S. Yu. (126), Artemov I. A. (116), Arslanova N. K. (Kovtonyuk N. K.) (104), Molchanov E. F. (93), Bolshakov N. M. (88), Chepurnov A. A. (85), Maskaev Yu. M. (81), Vlasova N. V. (76), Ronginskaya A.V. (73), Vereshchagin V. I. (73), Doronkin V. M. (71), Friesen N. V. (67), Popov M. G. (62), Zuev V. V. (61), Titov E. (49), Starovoitova Z. (49), Pospelov I. N. (44), Tyulina L. N. (42), Nechaev A. A. (42).

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 7,758 records. 1 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

  • Occurrence (core)
    7758
  • Multimedia 
    7758

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 7,758 records in English (672 KB) - Update frequency: unknown
Metadata as an EML file download in English (45 KB)
Metadata as an RTF file download in English (22 KB)

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Kovtonyuk N, Han I, Gatilova E, Ovchinnikov Y, Ovchinnikova S, Troshkina V, Lukmanova L, Ebel A, Yakubov V, Lashchinskiy N, Gureyeva I, Artemov I, Zibzeev E (2021): Ferns at the Central Siberian Botanical Garden herbarium collections (NS, NSK). v1.4. Central Siberian Botanical Garden SB RAS. Dataset/Occurrence. http://www.csbg.nsc.ru:8080/ipt/resource?r=ferns&v=1.4

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is Central Siberian Botanical Garden SB RAS. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 77973bd8-e146-463e-9452-05debd36c12a.  Central Siberian Botanical Garden SB RAS publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Participant Node Managers Committee.

Keywords

Occurrence; Specimen

Contacts

Who created the resource:

Nataliya Kovtonyuk
Senior researcher
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU +79529365495
Irina Han
Main engineer
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Evgeniya Gatilova
Main specialists
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Yuri Ovchinnikov
Main specialist
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Svetlana Ovchinnikova
Leading researcher
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Viktoria Troshkina
Head of laboratory
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Lyalya Lukmanova
Senior laboratory assistant
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Alexander Ebel
Leading researcher
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Valentin Yakubov
Senior Researcher
Federal Scientific Center of the East Asia Terrestrial Biodiversity FEB RAS Prospekt 100‑let Vladivostoka, 159 690022 Vladivostok Primorsky Krai
Nikolay Lashchinskiy
Сhief researcher
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl.
https://csbg-nsk.ru/lashchinskiy_nn
Irina Gureyeva
Head of Herbarium
Tomsk State University 36, Lenin Avenue 634050 Tomsk Tomskaya obl. RU
https://persona.tsu.ru/Home/UserProfile/95
Igor Artemov
Senior researcher
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Evgeniy Zibzeev
Head of laboratory
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl.
https://csbg-nsk.ru/zibzeev_eg

Who can answer questions about the resource:

Nataliya Kovtonyuk
Senior Researcher
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU +79529365495
Irina Han
main engineer
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU

Who filled in the metadata:

Nataliya Kovtonyuk
Senior researcher
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU
Irina Han
Main engineer
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl.

Who else was associated with the resource:

Author
Nataliya Kovtonyuk
Senior Researcher
Central Siberian Botanical Garden SB RAS Zolotodolinskaya Str., 101 630090 Novosibirsk Novosibirskaya obl. RU +79529365495

Geographic Coverage

Specimens from 43 countries presented: Russia (6918), United States of America (270), Germany (145), Canada (60), Georgia (40), Japan (31), Kazakhstan (29), Mongolia (27), Ukraine (25), Paraguay (20), Finland (20), Costa Rica (13), Turkey (12), Switzerland (12), Poland (12), Azerbaijan (12), Hungary (9), Bulgaria (9), Armenia (9), Norway (8), Kyrgyzstan (6), Italy (6), France (6), Moldova (5), Estonia (5), Czechia (5), Belize (5), Sweden (4), Mexico (4), Tajikistan (3), Slovakia (3), Romania (3), Luxembourg (3), Dominican Republic (3), Belarus (3), Uzbekistan (1), Turkmenistan (1), Seychelles (1), New Zealand (1), New Caledonia (1), Greenland (1), China (1), Austria (1). 52 regions of Russia are presented. Among them are all regions of Siberia, Russian Far East, Ural, but most of the specimens from European Russian regions were already published in the dataset "Vascular plants from European Russia in the CSBG SB RAS Digital herbarium" (Kovtonyuk, Han, Gatilova, 2020). Most specimens were collected from Republic of Buryatia (1032), Krasnoyarsk Krai (935), Irkutsk Oblast (823), Tuva Republic (773), Altai Republic (572), Novosibirsk Oblast (456), Primorsky Krai (382), Republic of Khakassia (351), Sakha (Yakutia) Republic (275), Zabaykalsky Krai (252).

Bounding Coordinates South West [-36.86, -173.02], North East [75.367, -166.567]

Taxonomic Coverage

Specimens of 20 families of ferns were included in this dataset: Anemiaceae (2), Aspleniaceae (391), Athyriaceae (1132), Blechnaceae (21), Cyatheaceae (9), Cystopteridaceae (1816), Dennstaedtiaceae (232), Dryopteridaceae (1594), Hymenophyllaceae (8), Lygodiaceae (2), Marsileaceae (4), Onocleaceae (232), Osmundaceae (39), Plagiogyriaceae (1), Polypodiaceae (439), Psilotaceae (1), Pteridaceae (425), Salviniaceae (58), Thelypteridaceae (284), Woodsiaceae (1068). The Ophioglossaceae family was previously published in dataset “Ophioglossaceae at the Central Siberian Botanical Garden herbarium collections (NS, NSK)”. The Equisetaceae family was excluded from this dataset. Most specimens are from the genera Dryopteris (1280), Cystopteris (1098), Woodsia (1067), Athyrium (803), Gymnocarpium (709), Polypodium (416), Asplenium (340), Diplazium (325), Polystichum (233), Pteridium (205), Cryptogramma (201), Phegopteris (158), Matteuccia (154), Cheilanthes (120), Thelypteris (85), Aspidium (68), Salvinia (56), Adiantum (55), Struthiopteris (46), Camptosorus (41).

Family  Anemiaceae,  Aspleniaceae,  Athyriaceae,  Blechnaceae,  Cyatheaceae,  Cystopteridaceae,  Dennstaedtiaceae,  Dryopteridaceae,  Hymenophyllaceae,  Lygodiaceae,  Marsileaceae,  Onocleaceae,  Osmundaceae,  Plagiogyriaceae,  Polypodiaceae,  Psilotaceae,  Pteridaceae,  Salviniaceae,  Thelypteridaceae,  Woodsiaceae
Genus  Acrostichum,  Adiantopsis,  Adiantum,  Aleuritopteris,  Ananthacorus,  Anchistea,  Anemia,  Arachniodes,  Argyrochosma,  Aspidium,  Asplenium,  Athyrium,  Azolla,  Blechnum,  Bolbitis,  Camptosorus,  Campyloneurum,  Ceterach,  Cheilanthes,  Coniogramme,  Crypsinus,  Cryptogramma,  Ctenitis,  Cyathea,  Cyclophorus,  Cyrtomium,  Cystopteris,  Dennstaedtia,  Deparia,  Diplazium,  Dryopteris,  Gymnocarpium,  Hymenophyllum,  Hypolepis,  Lepisorus,  Leptorumohra,  Loxogramme,  Lygodium,  Marsilea,  Matteuccia,  Mecodium,  Microlepia,  Monachosorum,  Neocheiropteris,  Nephrodium,  Notholaena,  Onoclea,  Oreopteris,  Osmunda,  Osmundastrum,  Parablechnum,  Parathelypteris,  Pellaea,  Phanerophlebia,  Phegopteris,  Phyllitis,  Pilularia,  Plagiogyria,  Pleopeltis,  Pleurosoriopsis,  Polypodium,  Polystichum,  Protowoodsia,  Pseudocystopteris,  Psilotum,  Pteridium,  Pteris,  Pyrrosia,  Rhizomatopteris,  Salvinia,  Scolopendrium,  Sphaerocionium,  Stegnogramma,  Struthiopteris,  Thelypteris,  Trichomanes,  Woodsia,  Woodwardia

Temporal Coverage

Start Date / End Date 1851-05-01 / 2021-05-17

Project Data

No Description available

Title Russia 2021
Identifier N-Eurasia-Russia2021

The personnel involved in the project:

Author
Nataliya Kovtonyuk
Processor
Evgeniya Gatilova
Curator
Lyalya Lukmanova

Sampling Methods

Dried and pressed herbarium specimens were digitized using two special scanners, ObjectScan 1600, according to the international standards, at 600 dpi, with a barcode, 24-color scale and spatial scale bar (Kovtonyuk, 2017; Kovtonyuk, Han, Gatilova, 2018). Images (*.jpg files) and metadata are stored in the CSBG SB RAS Digital Herbarium generated by ScanWizard Botany and MiVapp Botany software (Microtek, Taiwan).

Study Extent All ferns stored in NS and NSK herbarium collections were digitized by staff of the Digitization group in the Vascular Plant Systematics Laboratory of CSBG SB RAS.
Quality Control Specialists from the Tomsk State Univercity, Altay State Univercity (Barnaul), Irkutsk State University, Taymyr Nature Reserve, Main botanical Garden (Moskow), and the CSBG SB RAS took part in the identification of herbarium specimens.

Method step description:

  1. The digitization process includes the following 6 steps (Kovtonyuk, Han, Gatilova, 2018): 1. Mounting of dry plant material onto a herbarium sheet; 2. Checking the identification and nomenclature by a specialist; 3. Barcoding the specimen: printing a barcode on the thermal printer and affixing it to the herbarium sheet; 4. Placing the herbarium sheet, 24-color scale and scale bar on the scanner platform and image capturing; 5. Generating metadata, labeling OCR by ScanWizard Botany and verification of the label text by experts; 6. Archive management by MiVapp-Botany.

Collection Data

Collection Name I.M.Krasnoborov Herbarium at the Central Siberian Botanical garden SB RAS
Collection Identifier NS
Collection Name M.G. Popov Herbarium at the Central Siberian Botanical garden SB RAS
Collection Identifier NSK
Specimen preservation methods Dried and pressed

Bibliographic Citations

  1. Kovtonyuk N., Han I., Gatilova E. (2019). Digital Herbarium Collections of the Central Siberian Botanical Garden SB RAS, Novosibirsk, Russia. In: Bychkov I., Voronin V. (eds). Information Technologies in the Research of Biodiversity. Springer Proceedings in Earth and Environmental Sciences. Springer, Cham. P.22–27. DOI: https://doi.org/10.1007/978-3-030-11720-7_4
  2. Kovtonyuk N.K., Han I.V., Gatilova E.A., Pshenichkina Yu.A. (2019). Digital Herbarium of the CSBG SB RAS in Global Biodiversity Information Facilities // Rast. Mir Asian. Russia. N 4 (36). P.68–73. DOI: 10.21782/RMAR1995-2449-2019-4(68-73).
  3. Kovtonyuk N, Han I, Gatilova E (2020) Vascular plants from European Russia in the CSBG SB RAS Digital Herbarium. Biodiversity Data Journal 8: e56504. https://doi.org/10.3897/BDJ.8.e56504
  4. Kovtonyuk N., Han I. and Gatilova E. (2018). Digitization of the herbarium specimens of higher vascular plants in the Central Siberian Botanical Garden // Skvortsovia. V. 4, N 3. P.100-111. http://skvortsovia.uran.ru/2018/4302.pdf
  5. Kovtonyuk, N.K. (2017). Virtual herbarium collections as a resource for taxonomy and biodiversity study // Rast. Mir Asian. Russia. N 1(25). P. 98–104. DOI:10.21782/RMAR1995-2449-2017-1(98-104).
  6. Shmakov A.I. (2009). Key for the ferns of Russia. Barnaul: Artika, 126 p. ISBN 978-5-904016-12-8
  7. Shmakov A.I. (2011). Ferns of North Asia. Barnaul: Artika, 209 p. ISBN 978-5-905454-13-4
  8. Малышев Л.И., Доронькин В.М., Власова Н.В., Никифорова О.Д., Овчинникова С.В., Байков К.С., & Ковтонюк Н.К. (2012). Конспект флоры Азиатской России: Сосудистые растения/ Л.И. Малышев [и др.]; под ред. К.С. Байкова. Новосибирск: Издательство СО РАН. http://doi.org/10.5281/zenodo.4146886
  9. Kovtonyuk N, Han I, Gatilova E, Grant J (2021). Ophioglossaceae at the Central Siberian Botanical Garden herbarium collections (NS, NSK). Version 1.4. Central Siberian Botanical Garden SB RAS. Occurrence dataset https://doi.org/10.15468/wabgnr
  10. Kovtonyuk N, Han I, Gatilova E (2021). Vascular plants from European Russia in the CSBG SB RAS Digital herbarium. Version 1.9. Central Siberian Botanical Garden SB RAS. Occurrence dataset https://doi.org/10.15468/7anvyu

Additional Metadata

Purpose The purpose of this publication is to share biodiversity data by using GBIF on example of the ferns stored at the Central Siberian Botanic Garden SB RAS in NS and NSK collections and provide open online access to the CSBG SB RAS Digital herbarium (http://herb.csbg.nsc.ru:8081) as a data worldwide resource for studying biodiversity.
Alternative Identifiers 77973bd8-e146-463e-9452-05debd36c12a
http://www.csbg.nsc.ru:8080/ipt/resource?r=ferns